abbreviate.species.names <- function(x)
{
## Purpose: Abbreivate a binomial scientific name.
## Arguments:
## x: a vector of strings for the names of the species.
## Return: a vector of strings with the abbreviated names
## Author: Feiming Chen, Date: 20 Apr 2017, 14:01
## ________________________________________________
x1 <- gsub(" +", " ", x)
x2 <- sub("^ +", "", x1)
x3 <- sub(" +$", "", x2)
x4 <- strsplit(x3, " ")
sapply(x4, function(y) {
if (length(y) == 2) {
ans <- paste0(toupper(substr(y[1], 1, 1)), ".", tolower(y[2]))
} else ans <- y
ans
})
}
if (F) { # Unit Test
x = c("Escherichia coli", "Tyrannosaurus rex", "N/A", " Canis lupus ")
abbreviate.species.names(x) # "E.coli" "T.rex" "N/A" "C.lupus"
}
Thursday, April 20, 2017
Abbreivate a binomial scientific name
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